Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
virB9_1Type IV secretion system protein virB9 precursor. (158 aa)    
Predicted Functional Partners:
CEO17946.1
Type IV secretion system protein virB10.
 
 
 0.995
virB8_1
Type IV secretion system protein VirB8.
 
  
 0.985
CEO17945.1
Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.953
CEO16718.1
Type IV secretory pathway, VirB3-like protein.
 
  
 0.950
virB4_1
Type IV secretion system protein virB4.
 
  
 0.931
virB4_2
Type IV secretion system protein virB4.
 
  
 0.931
virB9_2
Type IV secretion system protein virB9 precursor.
  
  
 
0.913
virD4
Type IV secretion system protein virD4.
 
   
 0.867
CEO16724.1
Type IV secretion system protein VirB6.
 
 
 0.796
CEO16722.1
Type IV secretion system protein VirB6.
 
 
 0.754
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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