Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cshA | cspA | RMONA_08370 | RMONA_08375 | DEAD-box ATP-dependent RNA helicase CshA. | Cold shock protein CspA. | 0.789 |
| cshA | rplC | RMONA_08370 | RMONA_08220 | DEAD-box ATP-dependent RNA helicase CshA. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.963 |
| cshA | rplS | RMONA_08370 | RMONA_01655 | DEAD-box ATP-dependent RNA helicase CshA. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.492 |
| cshA | rplT | RMONA_08370 | RMONA_07860 | DEAD-box ATP-dependent RNA helicase CshA. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.666 |
| cshA | rpmA | RMONA_08370 | RMONA_03115 | DEAD-box ATP-dependent RNA helicase CshA. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.503 |
| cshA | rpoA | RMONA_08370 | RMONA_08100 | DEAD-box ATP-dependent RNA helicase CshA. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.898 |
| cshA | rpoB | RMONA_08370 | RMONA_02990 | DEAD-box ATP-dependent RNA helicase CshA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.900 |
| cshA | rpoZ | RMONA_08370 | RMONA_05580 | DEAD-box ATP-dependent RNA helicase CshA. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.804 |
| cspA | cshA | RMONA_08375 | RMONA_08370 | Cold shock protein CspA. | DEAD-box ATP-dependent RNA helicase CshA. | 0.789 |
| cspA | rplC | RMONA_08375 | RMONA_08220 | Cold shock protein CspA. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.691 |
| cspA | rplS | RMONA_08375 | RMONA_01655 | Cold shock protein CspA. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.722 |
| cspA | rplT | RMONA_08375 | RMONA_07860 | Cold shock protein CspA. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.741 |
| cspA | rpmA | RMONA_08375 | RMONA_03115 | Cold shock protein CspA. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.736 |
| cspA | rpmB | RMONA_08375 | RMONA_01490 | Cold shock protein CspA. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.706 |
| cspA | rpmE | RMONA_08375 | RMONA_01495 | Cold shock protein CspA. | 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.693 |
| cspA | rpoA | RMONA_08375 | RMONA_08100 | Cold shock protein CspA. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.857 |
| cspA | rpoB | RMONA_08375 | RMONA_02990 | Cold shock protein CspA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.886 |
| cspA | rpoZ | RMONA_08375 | RMONA_05580 | Cold shock protein CspA. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.894 |
| rplC | cshA | RMONA_08220 | RMONA_08370 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | DEAD-box ATP-dependent RNA helicase CshA. | 0.963 |
| rplC | cspA | RMONA_08220 | RMONA_08375 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Cold shock protein CspA. | 0.691 |
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