Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABOM_003248 | ABOM_011778 | A0A1F8A958 | A0A1F7ZJF8 | Essential protein Yae1. | tRNA ligase. | 0.528 |
ABOM_005920 | ABOM_011778 | A0A1F7ZWR7 | A0A1F7ZJF8 | Nuclear import and export protein Msn5. | tRNA ligase. | 0.553 |
ABOM_005986 | ABOM_009397 | A0A1F7ZY24 | A0A1F7ZR72 | ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. | Heat shock protein; Belongs to the heat shock protein 70 family. | 0.531 |
ABOM_005986 | ABOM_010912 | A0A1F7ZY24 | A0A1F7ZMR7 | ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. | Mitochondrial 54S ribosomal protein YmL23. | 0.522 |
ABOM_005986 | ABOM_011778 | A0A1F7ZY24 | A0A1F7ZJF8 | ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. | tRNA ligase. | 0.513 |
ABOM_008040 | ABOM_011778 | A0A1F7ZVR0 | A0A1F7ZJF8 | Phytase; Belongs to the histidine acid phosphatase family. | tRNA ligase. | 0.522 |
ABOM_008615 | ABOM_011778 | A0A1F7ZSP3 | A0A1F7ZJF8 | tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] | tRNA ligase. | 0.512 |
ABOM_008615 | ABOM_012245 | A0A1F7ZSP3 | A0A1F7ZI48 | tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] | tRNA splicing 2' phosphotransferase 1. | 0.512 |
ABOM_008995 | ABOM_011778 | A0A1F7ZTN0 | A0A1F7ZJF8 | Protein kinase and ribonuclease Ire1. | tRNA ligase. | 0.512 |
ABOM_009397 | ABOM_005986 | A0A1F7ZR72 | A0A1F7ZY24 | Heat shock protein; Belongs to the heat shock protein 70 family. | ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. | 0.531 |
ABOM_009397 | ABOM_010912 | A0A1F7ZR72 | A0A1F7ZMR7 | Heat shock protein; Belongs to the heat shock protein 70 family. | Mitochondrial 54S ribosomal protein YmL23. | 0.532 |
ABOM_009397 | ABOM_011778 | A0A1F7ZR72 | A0A1F7ZJF8 | Heat shock protein; Belongs to the heat shock protein 70 family. | tRNA ligase. | 0.515 |
ABOM_010912 | ABOM_005986 | A0A1F7ZMR7 | A0A1F7ZY24 | Mitochondrial 54S ribosomal protein YmL23. | ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. | 0.522 |
ABOM_010912 | ABOM_009397 | A0A1F7ZMR7 | A0A1F7ZR72 | Mitochondrial 54S ribosomal protein YmL23. | Heat shock protein; Belongs to the heat shock protein 70 family. | 0.532 |
ABOM_010912 | ABOM_011778 | A0A1F7ZMR7 | A0A1F7ZJF8 | Mitochondrial 54S ribosomal protein YmL23. | tRNA ligase. | 0.522 |
ABOM_011343 | ABOM_011778 | A0A1F7ZLR8 | A0A1F7ZJF8 | Protein bfr2. | tRNA ligase. | 0.548 |
ABOM_011778 | ABOM_003248 | A0A1F7ZJF8 | A0A1F8A958 | tRNA ligase. | Essential protein Yae1. | 0.528 |
ABOM_011778 | ABOM_005920 | A0A1F7ZJF8 | A0A1F7ZWR7 | tRNA ligase. | Nuclear import and export protein Msn5. | 0.553 |
ABOM_011778 | ABOM_005986 | A0A1F7ZJF8 | A0A1F7ZY24 | tRNA ligase. | ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. | 0.513 |
ABOM_011778 | ABOM_008040 | A0A1F7ZJF8 | A0A1F7ZVR0 | tRNA ligase. | Phytase; Belongs to the histidine acid phosphatase family. | 0.522 |
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