STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_009895Putative pectate lyase. (234 aa)    
Predicted Functional Partners:
ABOM_009787
SnoRNA binding protein.
   
 0.993
ABOM_008522
Putative small nucleolar ribonucleoprotein complex subunit.
   
 0.993
ABOM_003730
Putative small nucleolar ribonucleoprotein complex subunit.
   
 0.993
ABOM_001376
U3 small nucleolar RNA-associated protein 10.
   
 0.993
ABOM_005365
Small nucleolar ribonucleoprotein complex subunit Dip2.
   
 0.992
ABOM_005170
U3 small nucleolar RNA-associated protein 22.
   
 0.992
ABOM_005537
rRNA processing protein Utp6.
   
 0.991
ABOM_012244
WD domain protein.
   
 0.990
ABOM_005342
Small nucleolar ribonucleoprotein complex subunit.
   
 0.990
ABOM_010188
Putative small nucleolar ribonucleoprotein complex component (Utp5).
   
 0.989
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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