STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_008747Putative SUMO ligase SizA. (553 aa)    
Predicted Functional Partners:
ABOM_004180
Ubiquitin-like protein SMT3.
    
 0.979
ABOM_006818
SUMO-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.978
ABOM_003484
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.865
ABOM_008501
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 
 0.864
ABOM_008500
Proliferating cell nuclear antigen.
   
 
 0.864
ABOM_000939
mRNA cap methyltransferase.
    
 
 0.840
ABOM_010822
Postreplication repair E3 ubiquitin-protein ligase rad18.
    
 
 0.834
ABOM_006825
DNA repair and recombination protein radC.
    
 
 0.812
ABOM_008183
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
    
 0.810
ABOM_007173
Putative DNA damage repair protein (Rad9).
    
 0.774
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.