STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_009461LysM domain protein. (428 aa)    
Predicted Functional Partners:
ABOM_010271
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 0.888
ABOM_009364
Cytochrome c oxidase subunit 4.
   
 0.863
ABOM_011384
Cytochrome c subunit.
   
 0.860
ABOM_005235
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.823
ABOM_003531
Putative cytochrome c oxidase subunit Va.
   
 0.796
ABOM_011530
Cytochrome c oxidase subunit V.
   
 0.770
ABOM_011879
Disulfide isomerase.
   
 0.712
ABOM_001018
Uncharacterized protein.
   
  0.688
ABOM_002443
Putative ubiquinol-cytochrome C reductase complex subunit UcrQ.
   
  0.660
ABOM_000302
Ubiquinol-cytochrome C reductase complex subunit UcrQ.
   
  0.660
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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