STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_008585Extracellular dioxygenase. (384 aa)    
Predicted Functional Partners:
ABOM_007831
Putative TOR signaling pathway regulator (TapA).
    
 0.553
ABOM_000936
Cytochrome c oxidase assembly protein cox15.
    
 0.520
ABOM_000445
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.433
ABOM_010346
Glycogen branching enzyme GbeA; Belongs to the glycosyl hydrolase 28 family.
   
 
  0.425
ABOM_006528
ATP synthase subunit gamma.
   
   0.425
ABOM_006509
ATP synthase subunit delta.
    
   0.416
ABOM_011529
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.404
ABOM_010766
PHD transcription factor (Rum1).
    
 
 0.404
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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