STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_007133PSP family protein. (647 aa)    
Predicted Functional Partners:
ABOM_008752
Spliceosome-associated protein 49.
   
 0.999
ABOM_006146
U2 snRNP component prp10.
   
 0.999
ABOM_001379
Pre-mRNA-splicing factor rse1.
   
 0.999
ABOM_006559
Splicing factor 3B subunit 10 (SF3b10).
    
 0.998
ABOM_005345
Pre-mRNA branch site p14-like protein.
    
 0.998
ABOM_003565
ATP dependent DNA ligase domain protein.
   
 0.996
ABOM_008594
Small nuclear ribonucleoprotein U2.
   
 0.995
ABOM_002370
CWF complex protein sap62.
   
 0.995
ABOM_011060
Small nuclear ribonucleoprotein Sm D2.
  
 
 0.994
ABOM_011936
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.993
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.