STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_007302Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
ABOM_009682
RSC complex subunit Sfh1.
    
 
 0.786
ABOM_006177
Histone acetyltransferase type B subunit 2.
    
 0.758
ABOM_012199
Deacetylase complex subunit Sds3.
    
 0.739
ABOM_010526
HAD-like protein.
    
 0.739
ABOM_005177
RSC complex subunit (RSC1).
   
 
 0.722
ABOM_000633
Component of the RSC chromatin remodeling complex.
    
 
 0.719
ABOM_007487
SWI-SNF complex subunit (BAF60b).
   
 
 0.717
ABOM_005359
Actin-related protein 4; Belongs to the actin family.
    
 
 0.707
ABOM_011178
Histone deacetylase 1.
    
 0.684
ABOM_008532
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.684
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.