STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_006823Putative sphingolipid desaturase. (384 aa)    
Predicted Functional Partners:
ABOM_009832
Putative short-chain dehydrogenase.
   
 
 0.870
ABOM_007200
Putative 3-ketosphinganine reductase (Tsc10).
   
 
 0.870
ABOM_011079
Ceramide glucosyltransferase.
   
 
 0.811
ABOM_004162
Sphingosine kinase (SphK).
    
 0.806
ABOM_001010
Sphingomyelinase family protein.
     
 0.796
ABOM_009105
Uncharacterized protein.
    
 0.776
ABOM_006001
Endonuclease/exonuclease/phosphatase family protein.
     
 0.751
ABOM_009668
Longevity-assurance protein (LAC1).
    
 0.744
ABOM_008025
RTA1 domain protein.
    
 0.744
ABOM_005645
Uncharacterized protein.
    
 0.744
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.