STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_007093Integral membrane protein. (136 aa)    
Predicted Functional Partners:
ABOM_001367
RanBP1 domain protein.
    
 0.846
ABOM_006387
UBA/TS-N domain protein.
    
 0.694
ABOM_007645
Phosphatidyl synthase.
    
  0.625
ABOM_002384
Phosphatidyl synthase.
    
  0.625
ABOM_001207
Phosphatidyl synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.625
ABOM_001401
WD domain protein.
    
 0.608
ABOM_009770
Histone-lysine N-methyltransferase (Bre2).
    
 0.604
ABOM_004179
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.575
ABOM_009685
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.553
ABOM_008140
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.553
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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