STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_004962Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1. (477 aa)    
Predicted Functional Partners:
ABOM_007023
Putative ubiquitin-protein ligase (Rsp5).
    
  0.795
ABOM_002272
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
  
0.756
ABOM_010864
Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.
   
 0.728
ABOM_005986
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
   
 0.724
ABOM_010401
Pre-RNA splicing factor Srp2.
   
 0.688
ABOM_010754
RNA binding domain protein.
    
 0.686
ABOM_007006
PAB1 binding protein (Pbp1).
    
 
 0.671
ABOM_008758
snRNA cap binding complex subunit (Gcr3).
    
 0.668
ABOM_007109
Nuclear cap-binding protein subunit 2.
    
 0.667
ABOM_011012
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
    
 0.662
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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