STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_002635Uncharacterized protein. (80 aa)    
Predicted Functional Partners:
ABOM_002334
Mitochondrial 54S ribosomal protein RML2.
   
   0.751
ABOM_007524
Mitochondrial 37S ribosomal protein MRP4.
   
   0.736
ABOM_009129
Uncharacterized protein.
   
 
 0.731
ABOM_006273
Mitochondrial ribosomal protein DAP3.
   
 
 0.723
ABOM_009344
Mitochondrial 37S ribosomal protein MRPS5; Belongs to the universal ribosomal protein uS5 family.
   
   0.722
ABOM_011300
Ribosomal protein S15.
   
   0.715
ABOM_011325
Mitochondrial 54S ribosomal protein YmL6.
   
 
 0.704
ABOM_011086
Mitochondrial 54S ribosomal protein IMG1.
   
 
 0.696
ABOM_009792
Mitochondrial 54S ribosomal protein YmL3.
   
 
 0.696
ABOM_011891
CAF1 family ribonuclease.
   
 
 0.691
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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