STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABOM_001309Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (491 aa)    
Predicted Functional Partners:
ABOM_005327
SAGA complex component (Sgf73).
    
 0.995
ABOM_002422
SAGA complex component (Sgf29).
   
 0.994
ABOM_010044
Transcriptional activator spt7.
    
 0.991
ABOM_003549
Transcription-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.985
ABOM_009328
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.983
ABOM_002236
Transcriptional regulator Ngg1.
    
 0.983
ABOM_001394
Transcription initiation factor TFIID.
    
 0.983
ABOM_002487
Protein SPT3.
    
 0.980
ABOM_005226
Putative transcription initiation factor TFIID subunit 12.
    
 0.976
ABOM_006471
Transcription initiation factor TFIID subunit.
   
 0.972
Your Current Organism:
Aspergillus bombycis
NCBI taxonomy Id: 109264
Other names: A. bombycis, Aspergillus bombycis S.W. Peterson, Yoko Ito, B.W. Horn & T. Goto, 2001, CBS 117187, NRRL 26010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.