STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF2Membrane associated ring-CH-type finger 2. (262 aa)    
Predicted Functional Partners:
fbxo28
F-box protein 28.
   
    0.603
LOC109530341
CCR4-NOT transcription complex, subunit 2.
    
 
 0.554
LOC109532594
NOT2_3_5 domain-containing protein.
    
 
 0.554
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.539
faf2
Fas associated factor family member 2.
    
 
 0.539
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.484
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.474
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.474
SPATA5
Spermatogenesis associated 5.
    
 
 0.474
ENSHCOP00000028066
Syntaxin-6_N domain-containing protein.
    
 
 0.448
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.