cntnap5 protein (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

cntnap5

Contactin associated protein-like 5a. (1215 aa)

Predicted Functional Partners:

cntn2

0.482

cntn1

0.448

LOC109521478

0.448

LOC109521503

0.448

LOC109526659

0.448

LOC109526651

0.448

CNTN1

0.448

cntn5

0.448

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	cntnap5	ENSHCOP00000020201	ENSHCOP00000000479	Contactin 1.	Contactin associated protein-like 5a.	0.448
LOC109521478	cntnap5	ENSHCOP00000008662	ENSHCOP00000000479	Contactin 3b.	Contactin associated protein-like 5a.	0.448
LOC109521503	cntnap5	ENSHCOP00000009770	ENSHCOP00000000479	Contactin 4.	Contactin associated protein-like 5a.	0.448
LOC109526651	cntnap5	ENSHCOP00000015957	ENSHCOP00000000479	Contactin 3a, tandem duplicate 1.	Contactin associated protein-like 5a.	0.448
LOC109526659	cntnap5	ENSHCOP00000013383	ENSHCOP00000000479	Contactin 3a, tandem duplicate 2.	Contactin associated protein-like 5a.	0.448
cntn1	cntnap5	ENSHCOP00000006697	ENSHCOP00000000479	Contactin 1b.	Contactin associated protein-like 5a.	0.448
cntn2	cntnap5	ENSHCOP00000003256	ENSHCOP00000000479	Contactin 2.	Contactin associated protein-like 5a.	0.482
cntn5	cntnap5	ENSHCOP00000023628	ENSHCOP00000000479	Contactin 5.	Contactin associated protein-like 5a.	0.448
cntnap5	CNTN1	ENSHCOP00000000479	ENSHCOP00000020201	Contactin associated protein-like 5a.	Contactin 1.	0.448
cntnap5	LOC109521478	ENSHCOP00000000479	ENSHCOP00000008662	Contactin associated protein-like 5a.	Contactin 3b.	0.448
cntnap5	LOC109521503	ENSHCOP00000000479	ENSHCOP00000009770	Contactin associated protein-like 5a.	Contactin 4.	0.448
cntnap5	LOC109526651	ENSHCOP00000000479	ENSHCOP00000015957	Contactin associated protein-like 5a.	Contactin 3a, tandem duplicate 1.	0.448
cntnap5	LOC109526659	ENSHCOP00000000479	ENSHCOP00000013383	Contactin associated protein-like 5a.	Contactin 3a, tandem duplicate 2.	0.448
cntnap5	cntn1	ENSHCOP00000000479	ENSHCOP00000006697	Contactin associated protein-like 5a.	Contactin 1b.	0.448
cntnap5	cntn2	ENSHCOP00000000479	ENSHCOP00000003256	Contactin associated protein-like 5a.	Contactin 2.	0.482
cntnap5	cntn5	ENSHCOP00000000479	ENSHCOP00000023628	Contactin associated protein-like 5a.	Contactin 5.	0.448