STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109517114Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1020 aa)    
Predicted Functional Partners:
ENSHCOP00000000064
ARID domain-containing protein.
    
 0.826
ENSHCOP00000000066
Tudor domain-containing protein.
    
 0.826
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.826
LOC109516970
Uncharacterized protein.
   
 0.694
rbbp4
Retinoblastoma binding protein 4.
   
 0.694
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.647
LOC109525885
SIN3 transcription regulator family member Ab.
   
 0.644
Sin3a
SIN3 transcription regulator family member Aa.
   
 0.644
sin3b
SIN3 transcription regulator family member B.
   
 0.644
LOC109523313
RAN binding protein 2.
   
 0.607
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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