ENSHCOP00000001326 protein (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSHCOP00000001326

Uncharacterized protein. (90 aa)

Predicted Functional Partners:

vps35

0.982

LOC109520195

0.970

vps26a

0.961

LOC109507981

0.901

LOC109512476

0.855

snx3

0.855

SNX11

0.763

LOC109522110

0.763

snx10

0.763

LOC109515212

0.755

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000001326	LOC109507981	ENSHCOP00000001326	ENSHCOP00000006263	Uncharacterized protein.	Uncharacterized protein.	0.901
ENSHCOP00000001326	LOC109512476	ENSHCOP00000001326	ENSHCOP00000002753	Uncharacterized protein.	Sorting nexin 12.	0.855
ENSHCOP00000001326	LOC109515212	ENSHCOP00000001326	ENSHCOP00000005043	Uncharacterized protein.	TBC1 domain family, member 5.	0.755
ENSHCOP00000001326	LOC109520195	ENSHCOP00000001326	ENSHCOP00000017257	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.970
ENSHCOP00000001326	LOC109522110	ENSHCOP00000001326	ENSHCOP00000013300	Uncharacterized protein.	Sorting nexin 10a.	0.763
ENSHCOP00000001326	SNX11	ENSHCOP00000001326	ENSHCOP00000002674	Uncharacterized protein.	Sorting nexin 11.	0.763
ENSHCOP00000001326	snx10	ENSHCOP00000001326	ENSHCOP00000019783	Uncharacterized protein.	Sorting nexin 10b.	0.763
ENSHCOP00000001326	snx3	ENSHCOP00000001326	ENSHCOP00000024496	Uncharacterized protein.	Sorting nexin 3.	0.855
ENSHCOP00000001326	vps26a	ENSHCOP00000001326	ENSHCOP00000024537	Uncharacterized protein.	VPS26, retromer complex component A.	0.961
ENSHCOP00000001326	vps35	ENSHCOP00000001326	ENSHCOP00000005995	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.982
LOC109507981	ENSHCOP00000001326	ENSHCOP00000006263	ENSHCOP00000001326	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC109507981	LOC109512476	ENSHCOP00000006263	ENSHCOP00000002753	Uncharacterized protein.	Sorting nexin 12.	0.855
LOC109507981	LOC109515212	ENSHCOP00000006263	ENSHCOP00000005043	Uncharacterized protein.	TBC1 domain family, member 5.	0.755
LOC109507981	LOC109520195	ENSHCOP00000006263	ENSHCOP00000017257	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.970
LOC109507981	LOC109522110	ENSHCOP00000006263	ENSHCOP00000013300	Uncharacterized protein.	Sorting nexin 10a.	0.763
LOC109507981	SNX11	ENSHCOP00000006263	ENSHCOP00000002674	Uncharacterized protein.	Sorting nexin 11.	0.763
LOC109507981	snx10	ENSHCOP00000006263	ENSHCOP00000019783	Uncharacterized protein.	Sorting nexin 10b.	0.763
LOC109507981	snx3	ENSHCOP00000006263	ENSHCOP00000024496	Uncharacterized protein.	Sorting nexin 3.	0.855
LOC109507981	vps26a	ENSHCOP00000006263	ENSHCOP00000024537	Uncharacterized protein.	VPS26, retromer complex component A.	0.961
LOC109507981	vps35	ENSHCOP00000006263	ENSHCOP00000005995	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.982