rab41 protein (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rab41

RAB41, member RAS oncogene family. (211 aa)

Predicted Functional Partners:

RIC1

0.844

LOC109512947

0.817

LOC109513632

0.817

vps39

0.788

vps52

0.745

vps53

0.741

ENSHCOP00000027686

0.727

gcc2

0.727

cog6

0.723

ENSHCOP00000004751

0.720

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000004751	RIC1	ENSHCOP00000004751	ENSHCOP00000015438	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.601
ENSHCOP00000004751	rab41	ENSHCOP00000004751	ENSHCOP00000003115	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB41, member RAS oncogene family.	0.720
ENSHCOP00000027686	RIC1	ENSHCOP00000027686	ENSHCOP00000015438	GRIP domain-containing protein.	RIC1 homolog, RAB6A GEF complex partner 1.	0.479
ENSHCOP00000027686	cog6	ENSHCOP00000027686	ENSHCOP00000014588	GRIP domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.503
ENSHCOP00000027686	rab41	ENSHCOP00000027686	ENSHCOP00000003115	GRIP domain-containing protein.	RAB41, member RAS oncogene family.	0.727
ENSHCOP00000027686	vps52	ENSHCOP00000027686	ENSHCOP00000006844	GRIP domain-containing protein.	VPS52 subunit of GARP complex.	0.574
ENSHCOP00000027686	vps53	ENSHCOP00000027686	ENSHCOP00000025605	GRIP domain-containing protein.	VPS53 subunit of GARP complex.	0.686
LOC109512947	RIC1	ENSHCOP00000006541	ENSHCOP00000015438	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.634
LOC109512947	rab41	ENSHCOP00000006541	ENSHCOP00000003115	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB41, member RAS oncogene family.	0.817
LOC109513632	RIC1	ENSHCOP00000022473	ENSHCOP00000015438	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.634
LOC109513632	rab41	ENSHCOP00000022473	ENSHCOP00000003115	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB41, member RAS oncogene family.	0.817
RIC1	ENSHCOP00000004751	ENSHCOP00000015438	ENSHCOP00000004751	RIC1 homolog, RAB6A GEF complex partner 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.601
RIC1	ENSHCOP00000027686	ENSHCOP00000015438	ENSHCOP00000027686	RIC1 homolog, RAB6A GEF complex partner 1.	GRIP domain-containing protein.	0.479
RIC1	LOC109512947	ENSHCOP00000015438	ENSHCOP00000006541	RIC1 homolog, RAB6A GEF complex partner 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.634
RIC1	LOC109513632	ENSHCOP00000015438	ENSHCOP00000022473	RIC1 homolog, RAB6A GEF complex partner 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.634
RIC1	cog6	ENSHCOP00000015438	ENSHCOP00000014588	RIC1 homolog, RAB6A GEF complex partner 1.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.767
RIC1	gcc2	ENSHCOP00000015438	ENSHCOP00000027687	RIC1 homolog, RAB6A GEF complex partner 1.	GRIP domain-containing protein.	0.479
RIC1	rab41	ENSHCOP00000015438	ENSHCOP00000003115	RIC1 homolog, RAB6A GEF complex partner 1.	RAB41, member RAS oncogene family.	0.844
RIC1	vps52	ENSHCOP00000015438	ENSHCOP00000006844	RIC1 homolog, RAB6A GEF complex partner 1.	VPS52 subunit of GARP complex.	0.660
RIC1	vps53	ENSHCOP00000015438	ENSHCOP00000025605	RIC1 homolog, RAB6A GEF complex partner 1.	VPS53 subunit of GARP complex.	0.672