STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp48Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family. (956 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.861
rps27a
Ribosomal protein S27a.
   
 0.805
ENSHCOP00000007719
Ubiquitin-like domain-containing protein.
    
 0.737
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.737
nedd8
NEDD8 ubiquitin like modifier, like.
   
 0.712
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
   
 0.712
UBL4A
Ubiquitin like 4A.
   
 0.684
LOC109509358
Ubiquitin-like domain-containing protein.
   
 0.684
gmps
Guanine monophosphate synthase.
   
 
 0.674
usp5
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.667
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.