STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109527038ATPase family AAA domain containing 5a. (1619 aa)    
Predicted Functional Partners:
rfc3
Replication factor C (activator 1) 3.
   
 0.981
rfc5
Replication factor C (activator 1) 5.
   
 0.974
rfc2
Replication factor C (activator 1) 2.
   
 0.970
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.962
ENSHCOP00000007515
Uncharacterized protein.
   
 0.926
rfc4
Replication factor C (activator 1) 4.
   
 0.926
exo1
Exonuclease 1.
   
 0.897
wdhd1
WD repeat and HMG-box DNA binding protein 1.
   
 
 0.897
rad17
RAD17 checkpoint clamp loader component.
   
 0.885
chtf18
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
   
0.865
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.