STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHCOP00000005963Uncharacterized protein. (256 aa)    
Predicted Functional Partners:
LOC109525560
Procollagen, type V, alpha 1.
 
      0.899
col9a2
Procollagen, type IX, alpha 2.
 
      0.851
LOC109517480
Collagen, type X, alpha 1a.
 
      0.838
col9a3
Collagen, type IX, alpha 3.
 
      0.830
col8a1
C1q domain-containing protein.
 
      0.727
col5a2
Collagen, type V, alpha 2a.
 
      0.710
LOC109524772
Collagen, type I, alpha 1a.
 
      0.478
LOC109528540
Collagen, type II, alpha 1a.
 
      0.449
ENSHCOP00000023803
Uncharacterized protein.
    
 0.436
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.