STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (798 aa)    
Predicted Functional Partners:
LOC109520195
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.999
vps26a
VPS26, retromer complex component A.
   
 0.999
ENSHCOP00000001326
Uncharacterized protein.
   
 0.982
LOC109507981
Uncharacterized protein.
   
 0.982
LOC109512476
Sorting nexin 12.
   
 0.975
snx3
Sorting nexin 3.
   
 0.975
SNX2
Sorting nexin 2.
   
 0.954
LOC109518208
Sorting nexin 1a.
   
 0.941
snx1
Sorting nexin 1b.
   
 0.941
LOC109515212
TBC1 domain family, member 5.
   
 
 0.898
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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