STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHCOP00000006497Vps4_C domain-containing protein. (70 aa)    
Predicted Functional Partners:
chmp6
Charged multivesicular body protein 6.
    
 0.949
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.944
chmp2a
Charged multivesicular body protein 2A.
    
 0.942
ist1
IST1 factor associated with ESCRT-III.
   
 0.930
chmp3
Charged multivesicular body protein 3.
   
 0.839
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.837
cunh17orf75
Zgc:153240.
    
 0.833
LOC109517798
Charged multivesicular body protein 4Bb.
    
 0.787
LOC109510302
Uncharacterized protein.
    
 0.787
chmp1b
Chromatin modifying protein 1B.
   
 0.782
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.