STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ush1cUsher syndrome 1C. (518 aa)    
Predicted Functional Partners:
cdh23
Cadherin-related 23.
   
 
 0.941
Ush1g
Usher syndrome 1Ga (autosomal recessive).
    
 0.940
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
    
 0.929
cdhr2
Uncharacterized protein.
   
 
 0.900
ENSHCOP00000027011
Uncharacterized protein.
    
 
 0.704
irx3
Iroquois homeobox 3a.
   
  
 0.688
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
      
 0.682
LOC109515660
Myosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.666
ENSHCOP00000027595
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.666
sall4
Spalt-like transcription factor 4.
      
 0.638
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.