STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (218 aa)    
Predicted Functional Partners:
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
 0.890
zmat5
Zinc finger, matrin-type 5.
    
 0.876
sf3b1
Splicing factor 3b, subunit 1.
   
 0.765
sf3b4
Splicing factor 3b, subunit 4.
  
 
 0.760
sf3b2
Splicing factor 3b, subunit 2.
   
 0.756
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.745
snrpg
Small nuclear ribonucleoprotein G.
   
 0.743
snrnp25
Small nuclear ribonucleoprotein 25.
     
 0.737
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.737
rbm34
RNA binding motif protein 34.
  
   
 0.722
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.