STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHCOP00000007426Si:dkey-34f9.3. (151 aa)    
Predicted Functional Partners:
heca
Hdc homolog, cell cycle regulator.
      
 0.577
nudt6
Nudix (nucleoside diphosphate linked moiety X)-type motif 6.
      
 0.487
LOC109507402
Transcription factor 3a.
    
 0.464
tcf12
Transcription factor 12.
    
 0.464
LOC109507481
BHLH domain-containing protein.
    
 0.464
LOC109532234
Transcription factor 3b.
    
 0.464
TCF4
Transcription factor 4.
    
 0.464
LOC109512683
LIM domain binding 1a.
    
 0.425
LOC109526252
LIM domain binding 2a.
    
 0.425
ldb1
LIM-domain binding 1b.
    
 0.425
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.