STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alkbh6AlkB homolog 6. (237 aa)    
Predicted Functional Partners:
med29
Mediator complex subunit 29.
    
 
 0.839
alkbh7
AlkB homolog 7.
   
  
 0.711
alkbh4
AlkB homolog 4, lysine demthylase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
      
 0.620
ENSHCOP00000023016
Ras suppressor protein 1.
      
 0.616
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.615
vps51
VPS51 subunit of GARP complex.
      
 0.578
jmjd4
Jumonji domain containing 4.
      
 0.570
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.567
LOC109521469
SET domain and mariner transposase fusion gene.
      
 0.471
dhx30
DEAH (Asp-Glu-Ala-His) box helicase 30.
      
 0.471
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.