STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sall3Spalt-like transcription factor 3a. (1252 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
   
 0.690
LOC109527971
POU domain protein.
   
 0.657
LOC109516970
Uncharacterized protein.
    
 0.558
sall4
Spalt-like transcription factor 4.
  
 
0.536
LOC109507328
Uncharacterized protein.
    
 0.492
LOC109532150
GATA zinc finger domain containing 2Ab.
    
 0.492
gatad2b
GATA zinc finger domain containing 2B.
    
 0.492
bsx
Brain-specific homeobox.
   
 0.458
LOC109523066
Ventral homeobox.
   
 0.458
mta1
Metastasis associated 1.
    
  0.432
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.