STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHCOP00000008815PDZ domain-containing protein. (110 aa)    
Predicted Functional Partners:
LOC109516320
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.691
LOC109508599
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.691
gna12
G protein subunit alpha 12.
    
 0.691
rnd3
Rho family GTPase 3a.
   
 0.601
RND1
Rho family GTPase 1.
   
 0.601
LOC109528419
Ras homolog gene family, member Aa.
   
 0.600
LOC109522387
Uncharacterized protein.
   
 0.600
LOC109511764
Uncharacterized protein.
   
 0.600
LOC109531368
Uncharacterized protein.
   
 0.600
LOC109507788
Uncharacterized protein.
   
 0.600
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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