STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msx1Muscle segment homeobox 1a. (286 aa)    
Predicted Functional Partners:
Pax9
Paired box 9.
    
 
 0.618
LOC109519492
Cysteine-serine-rich nuclear protein 1b.
      
 0.585
lef1
Lymphoid enhancer-binding factor 1.
   
  
 0.577
LOC109531976
Forkhead box E3.
   
  
 0.567
foxd3
Forkhead box D3.
   
  
 0.545
LOC109512458
Homeobox domain-containing protein.
  
 
0.543
LOC109519513
Zic family member 1 (odd-paired homolog, Drosophila).
    
 
 0.532
LOC109523037
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.526
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
      
 0.521
ENSHCOP00000023388
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
  
 0.496
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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