STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aggf1Angiogenic factor with G patch and FHA domains 1. (738 aa)    
Predicted Functional Partners:
ddx10
RNA helicase.
    
 0.644
nol6
Nucleolar protein 6.
   
 
 0.625
utp6
UTP6 small subunit processome component.
   
 
 0.621
ddx18
RNA helicase.
    
 0.604
utp3
UTP3 small subunit processome component.
   
   0.604
rrp36
Ribosomal RNA processing 36.
   
   0.599
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.596
utp25
UTP25 small subunit processor component.
    
   0.593
nop14
NOP14 nucleolar protein homolog (yeast).
    
   0.593
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
   0.593
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.