STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109518865Uncharacterized protein. (479 aa)    
Predicted Functional Partners:
PUF60
Poly-U binding splicing factor b.
  
  
 
0.901
sf3a2
Splicing factor 3a, subunit 2.
   
 0.804
sf3b3
Splicing factor 3b, subunit 3.
    
 0.772
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.744
sf3b1
Splicing factor 3b, subunit 1.
   
 0.740
fubp1
Far upstream element (FUSE) binding protein 1.
   
 
 0.723
LOC109527367
KH-type splicing regulatory protein.
   
 
 0.723
sf3a1
Splicing factor 3a, subunit 1.
   
 0.699
sf3b2
Splicing factor 3b, subunit 2.
   
 0.694
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.684
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.