STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109530282Retinoid X receptor, alpha a. (444 aa)    
Predicted Functional Partners:
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
0.940
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
0.810
LOC109517754
Nuclear receptor subfamily 1, group H, member 5.
   
0.810
ncor2
Nuclear receptor corepressor 2.
    
 0.797
ncor1
Nuclear receptor corepressor 1.
    
 0.797
PPARA
Peroxisome proliferator-activated receptor alpha b.
    
0.760
ppard
Peroxisome proliferator-activated receptor delta b.
    
0.750
ncoa1
Nuclear receptor coactivator 1.
   
 0.728
PPARG
Peroxisome proliferator activated receptor gamma.
    
0.714
ENSHCOP00000019590
Uncharacterized protein.
   
0.700
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.