STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf130Ring finger protein 130. (496 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.576
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.530
ENSHCOP00000007719
Ubiquitin-like domain-containing protein.
    
 0.527
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.527
LOC109525917
RING-type domain-containing protein.
   
0.506
r3hdm1
R3H domain containing 1.
    
 
 0.475
ube2k
Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.469
zfand4
Zinc finger, AN1-type domain 4.
   
 0.464
otub1
Ubiquitin thioesterase.
   
 0.440
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
   
 0.440
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.