STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109512197SH3-domain binding protein 5b (BTK-associated). (465 aa)    
Predicted Functional Partners:
LOC109532401
Uncharacterized protein.
    
 
 0.576
LOC109532170
Uncharacterized protein.
    
 
 0.576
LOC109527154
Uncharacterized protein.
    
 
 0.576
rab11a
RAB11a, member RAS oncogene family.
    
 
 0.576
LOC109521024
RAB11a, member RAS oncogene family, like.
    
 
 0.576
LOC109517169
Reticulon 4 receptor-like 1a.
      
 0.566
LOC109517878
Serine/threonine kinase 10.
   
  
 0.542
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
   
  
 0.502
dhps
Deoxyhypusine synthase.
      
 0.495
trappc10
Trafficking protein particle complex 10.
      
 0.471
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.