STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109511614Ankyrin repeat and SOCS box containing 6. (401 aa)    
Predicted Functional Partners:
cul5
Cullin 5a; Belongs to the cullin family.
    
 0.775
rnf41
Ring finger protein 41.
   
 0.717
rnf7
Ring finger protein 7.
    
 0.661
asb7
Ankyrin repeat and SOCS box containing 7.
    
 0.599
asb1
Ankyrin repeat and SOCS box containing 1.
    
 0.596
RNF7
Ring finger protein 7.
    
 0.563
nedd8
NEDD8 ubiquitin like modifier, like.
    
  0.554
commd8
COMM domain containing 8.
   
  0.553
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.541
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.535
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.