STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3a1Splicing factor 3a, subunit 1. (781 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.999
sf3a3
Splicing factor 3a, subunit 3.
   
 0.999
sf3b4
Splicing factor 3b, subunit 4.
   
 0.998
ENSHCOP00000005080
Small nuclear ribonucleoprotein polypeptide A.
   
 0.998
ENSHCOP00000022844
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.998
sf3b3
Splicing factor 3b, subunit 3.
   
 0.998
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.996
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 
 0.995
prpf19
Pre-mRNA processing factor 19.
   
 
 0.995
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.994
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.