STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urodUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (368 aa)    
Predicted Functional Partners:
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.996
uros
Uroporphyrinogen III synthase.
  
 
 0.996
cpox
Coproporphyrinogen oxidase.
  
 0.996
hmbs
Hydroxymethylbilane synthase a.
 0.985
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.955
tyw1
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
    
 0.879
mocs1
Molybdenum cofactor synthesis 1.
    
  0.865
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
  
 
 0.747
cdk5rap1
CDK5 regulatory subunit associated protein 1.
  
 
 0.747
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.670
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.