STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zc2hc1aZinc finger, C2HC-type containing 1A. (326 aa)    
Predicted Functional Partners:
castor1
Uncharacterized protein.
    
 
 0.749
LOC109516720
Cytosolic arginine sensor for mTORC1 subunit 2.
    
 
 0.666
rufy3
RUN and FYVE domain containing 3.
      
 0.619
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
      
 0.581
fam163b
Family with sequence similarity 163 member B, genome duplicate a.
      
 0.569
wdr59
WD repeat domain 59.
      
 0.568
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.565
ECHDC3
Enoyl-CoA hydratase domain containing 3.
      
 0.495
wdr24
WD repeat domain 24.
      
 0.470
mcts1
Malignant T-cell-amplified sequence.
      
 0.468
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.