STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHCOP00000014207UBR-type domain-containing protein. (78 aa)    
Predicted Functional Partners:
LOC109514724
Uncharacterized protein.
 
     0.827
KCMF1
Potassium channel modulatory factor 1.
    
 
 0.669
kcmf1
Potassium channel modulatory factor 1.
    
 
 0.669
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.542
ENSHCOP00000026507
Uncharacterized protein.
 
     0.512
ENSHCOP00000009419
Uncharacterized protein.
   
 
 0.488
Huwe1
HECT domain-containing protein.
   
 
 0.488
ubr5
Ubiquitin protein ligase E3 component n-recognin 5.
   
  
 0.459
uba5
Ubiquitin-like modifier activating enzyme 5.
   
 
 0.455
Atg7
ATG7_N domain-containing protein.
   
 
 0.455
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.