STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109515006LITAF domain-containing protein. (123 aa)    
Predicted Functional Partners:
ENSHCOP00000011006
Uncharacterized protein.
    
 0.848
ENSHCOP00000011034
FA complementation group M.
    
 0.848
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.556
rbbp4
Retinoblastoma binding protein 4.
    
 0.549
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.527
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.520
ddx47
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.
    
 0.415
naa60
N-acetyltransferase 15 (GCN5-related, putative).
      
 0.407
rpa2
Replication protein A2.
   
 0.405
ENSHCOP00000007050
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.405
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.