STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b6Splicing factor 3b, subunit 6. (125 aa)    
Predicted Functional Partners:
sf3b4
Splicing factor 3b, subunit 4.
    
 0.999
sf3b2
Splicing factor 3b, subunit 2.
    
 0.999
sf3b3
Splicing factor 3b, subunit 3.
    
 0.999
sf3b1
Splicing factor 3b, subunit 1.
   
 0.999
LOC109509128
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.998
phf5a
PHD finger protein 5A.
   
 0.998
sf3a2
Splicing factor 3a, subunit 2.
   
 0.996
mfap1
Microfibril associated protein 1.
   
   0.991
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
   0.991
TCERG1
Transcription elongation regulator 1.
    
   0.989
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.