STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubl7Ubiquitin-like 7b (bone marrow stromal cell-derived). (339 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.979
ENSHCOP00000009027
SH3 domain-containing protein.
    
 0.945
ENSHCOP00000009056
Uncharacterized protein.
    
 0.945
ENSHCOP00000023126
Uncharacterized protein.
    
 0.945
ENSHCOP00000027446
Uncharacterized protein.
    
 0.945
ENSHCOP00000027460
Uncharacterized protein.
    
 0.945
nbr1
NBR1 autophagy cargo receptor b.
   
 0.932
LOC109512410
NBR1 autophagy cargo receptor a.
   
 0.932
psmd13
Proteasome 26S subunit, non-ATPase 13.
   
 0.932
LOC109514590
Proteasome 26S subunit, non-ATPase 4a.
   
 0.928
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.