STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109510507ISL LIM homeobox 1. (349 aa)    
Predicted Functional Partners:
lhx4
LIM homeobox 4.
   
0.766
LHX3
LIM homeobox 3.
   
0.766
LOC109512683
LIM domain binding 1a.
    
 0.664
LOC109526252
LIM domain binding 2a.
    
 0.664
ldb1
LIM-domain binding 1b.
    
 0.664
Ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.506
ENSHCOP00000007528
Achaete-scute family bHLH transcription factor 1b.
   
 0.418
vsx1
Visual system homeobox 1 homolog, chx10-like.
   
  
 0.418
barx1
BARX homeobox 1.
   
 
 0.413
nkx2-5
NK2 homeobox 5.
    
 
 0.406
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.