STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpc5Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (562 aa)    
Predicted Functional Partners:
LOC109527493
Notum pectinacetylesterase 2.
    
 0.577
notum
Notum, palmitoleoyl-protein carboxylesterase a.
    
 0.577
LOC109517626
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.567
unc5d
Unc-5 netrin receptor Db.
    
   0.560
LOC109526075
Unc-5 netrin receptor Da.
    
   0.560
SDC3
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.536
dcn
Decorin; May affect the rate of fibrils formation.
    
 0.524
LOC109519918
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3.
    
 0.513
ndst1
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a.
    
 0.513
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
     
 0.511
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.