STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxb5Homeobox B5b. (282 aa)    
Predicted Functional Partners:
LOC109526543
Homeobox B6b.
   
 
0.788
LOC109508589
Homeobox domain-containing protein.
   
 
0.788
hoxc4
Homeobox C4a.
   
 
0.774
hoxb4
Homeobox B4a.
  
 
0.770
hoxb9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.637
hoxd4
Homeobox D4a.
   
 
0.637
LOC109521169
Pre-B-cell leukemia homeobox 1b.
    
 0.636
LOC109512200
Pre-B-cell leukemia homeobox 2.
    
 0.636
pbx3
Homeobox domain-containing protein.
    
 0.636
ENSHCOP00000016330
Uncharacterized protein.
    
 0.636
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.