ENSHCOP00000019607 protein (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSHCOP00000019607

Uncharacterized protein. (239 aa)

Predicted Functional Partners:

prpf6

0.735

eftud2

0.698

pes1

0.690

gtpbp4

0.659

atp5po

0.645

sf3b1

0.623

atp5pd

0.621

sf3b3

0.617

cdc5l

0.610

rbm8a

0.604

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000019607	atp5pd	ENSHCOP00000019607	ENSHCOP00000017088	Uncharacterized protein.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.621
ENSHCOP00000019607	atp5po	ENSHCOP00000019607	ENSHCOP00000018464	Uncharacterized protein.	ATP synthase peripheral stalk subunit OSCP.	0.645
ENSHCOP00000019607	cdc5l	ENSHCOP00000019607	ENSHCOP00000016794	Uncharacterized protein.	CDC5 cell division cycle 5-like (S. pombe).	0.610
ENSHCOP00000019607	eftud2	ENSHCOP00000019607	ENSHCOP00000026605	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.698
ENSHCOP00000019607	gtpbp4	ENSHCOP00000019607	ENSHCOP00000023201	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.659
ENSHCOP00000019607	pes1	ENSHCOP00000019607	ENSHCOP00000013455	Uncharacterized protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.690
ENSHCOP00000019607	prpf6	ENSHCOP00000019607	ENSHCOP00000023190	Uncharacterized protein.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.735
ENSHCOP00000019607	rbm8a	ENSHCOP00000019607	ENSHCOP00000022425	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.604
ENSHCOP00000019607	sf3b1	ENSHCOP00000019607	ENSHCOP00000026107	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.623
ENSHCOP00000019607	sf3b3	ENSHCOP00000019607	ENSHCOP00000023416	Uncharacterized protein.	Splicing factor 3b, subunit 3.	0.617
atp5pd	ENSHCOP00000019607	ENSHCOP00000017088	ENSHCOP00000019607	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Uncharacterized protein.	0.621
atp5pd	atp5po	ENSHCOP00000017088	ENSHCOP00000018464	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase peripheral stalk subunit OSCP.	0.999
atp5po	ENSHCOP00000019607	ENSHCOP00000018464	ENSHCOP00000019607	ATP synthase peripheral stalk subunit OSCP.	Uncharacterized protein.	0.645
atp5po	atp5pd	ENSHCOP00000018464	ENSHCOP00000017088	ATP synthase peripheral stalk subunit OSCP.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.999
atp5po	eftud2	ENSHCOP00000018464	ENSHCOP00000026605	ATP synthase peripheral stalk subunit OSCP.	Elongation factor Tu GTP binding domain containing 2.	0.806
cdc5l	ENSHCOP00000019607	ENSHCOP00000016794	ENSHCOP00000019607	CDC5 cell division cycle 5-like (S. pombe).	Uncharacterized protein.	0.610
cdc5l	eftud2	ENSHCOP00000016794	ENSHCOP00000026605	CDC5 cell division cycle 5-like (S. pombe).	Elongation factor Tu GTP binding domain containing 2.	0.997
cdc5l	prpf6	ENSHCOP00000016794	ENSHCOP00000023190	CDC5 cell division cycle 5-like (S. pombe).	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.625
cdc5l	rbm8a	ENSHCOP00000016794	ENSHCOP00000022425	CDC5 cell division cycle 5-like (S. pombe).	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.603
cdc5l	sf3b1	ENSHCOP00000016794	ENSHCOP00000026107	CDC5 cell division cycle 5-like (S. pombe).	Splicing factor 3b, subunit 1.	0.997