STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfrp1ADP-ribosylation factor related protein 1. (188 aa)    
Predicted Functional Partners:
cog8
Component of oligomeric golgi complex 8.
   
 0.879
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
   
 
 0.875
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.842
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.819
vps53
VPS53 subunit of GARP complex.
     
 0.799
vps52
VPS52 subunit of GARP complex.
   
 0.738
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.733
vps54
VPS54 subunit of GARP complex.
     
 0.719
LOC109518260
Uncharacterized protein.
    
 0.714
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
    
0.714
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.