STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHORhodopsin. (453 aa)    
Predicted Functional Partners:
LOC109510657
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.
   
 0.793
LOC109511837
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
 0.793
LOC109527668
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 0.748
LOC109528902
Arrestin 3a, retinal (X-arrestin).
   
 0.715
gnb2
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
 0.712
gnb1
Guanine nucleotide binding protein (G protein), beta polypeptide 1a.
    
 0.712
LOC109507118
Guanine nucleotide binding protein (G protein), beta polypeptide 1b.
    
 0.712
gnb4
Guanine nucleotide binding protein (G protein), beta polypeptide 4b.
    
 0.712
LOC109514353
Arrestin_C domain-containing protein.
   
 0.704
LOC109518836
S-antigen; retina and pineal gland (arrestin) a.
   
 0.704
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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